05). All identified proteins were functionally classified according to the Kyoto Encyclopedia of Genes and Genomes (KEGG) PATHWAY database (http://www.genome.ad.jp/kegg/pathway.html). In addition, BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi) and CCD conserved domain (http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml) searches were performed on the predicted check details or hypothetical proteins that had unknown functions to identify structurally and/or functionally conserved motifs. Carotenoid
extraction and HPLC analysis Total carotenoids were extracted from the cell pellets according to the methods described by An et al. [51]. Carotenoids were quantified by absorbance at 465 nm with an absorption coefficient of A1% = 2,100. The analyses were performed in triplicate, and pigments were normalized relative to the dry weight of the yeast. Acknowledgements We thank Carola this website Eck for assistance during MALDI-TOF MS. We gratefully acknowledge the scientific and technical support given by the Genomics Technology Platform of the Center for Biotechnology at Bielefeld University. This work was supported by Fondecyt 1100324 and Deutscher
eFT508 in vitro Akademischer Austauschdienst (DAAD) through a graduate scholarship to P. Martinez-Moya. Electronic supplementary material Additional file 1: Fig. S1. 2D gels of soluble proteins from X. dendrorhous in the exponential and stationary phases of growth. Shown are a representative 2D gels for both the exponential and stationary growth phases. (TIFF 2 MB) Additional file 2: Table S1. X. dendrorhous proteins identified by MALDI-TOF MS. This table lists all Org 27569 MS-identified proteins that were separated by 2D electrophoresis. (DOC 394 KB) Additional file 3: Table S2. Comparative proteomic data from yeast and the carotenogenic
alga H. pluvialis. This table compares the most significant results from previous proteomic works on yeast and carotenogenic algae. (DOC 70 KB) Additional file 4: Fig. S2. Differential abundance proteins from X. dendrorhous. Shown are a representative proteins spots during the growth. (JPEG 281 KB) References 1. Rodriguez-Saiz M, de la Fuente JL, Barredo JL: Xanthophyllomyces dendrorhous for the industrial production of astaxanthin. Appl Microbiol Biotechnol 2010, 88:645–658.PubMedCrossRef 2. Schmidt I, Schewe H, Gassel S, Jin C, Buckingham J, Humbelin M, Sandmann G, Schrader J: Biotechnological production of astaxanthin with Phaffia rhodozyma/Xanthophyllomyces dendrorhous . Appl Microbiol Biotechnol 2010, in press. 3. Schroeder W, Johnson EA: Antioxidant role of carotenoids in Phaffia rhodozyma . J Gen Microbiol 1993, 139:907–912. 4. Higuera-Ciapara I, Felix-Valenzuela L, Goycoolea FM: Astaxanthin: a review of its chemistry and applications. Crit Rev Food Sci Nutr 2006, 46:185–196.PubMedCrossRef 5. de la Fuente JL, Rodriguez-Saiz M, Schleissner C, Diez B, Peiro E, Barredo JL: High-titer production of astaxanthin by the semi-industrial fermentation of Xanthophyllomyces dendrorhous .