Survival curves were plotted according to the Kaplan-Meier method and were compared using the log-rank test. A Cox proportional hazard regression model for multivariate analysis was used to test the confounding effect of the variables that are most closely associated with the expression levels of the

different protein expression status. All tests were two-sided, and p-values <0.05 were considered to be statistically significant. The SPSS 15.0 software package was used to perform the statistical analysis (SPSS Institute, version 15.0, Chicago, USA). Results Identification of Hsp90-beta and annexin A1 as differential protein Using 2D LC-MS /MS, we compared the protein expression profiles among A549, H446, and 16 HBE cells. After comparing the variations in the average abundance, a total of 26 differential proteins (C1.5-fold) Baf-A1 in vitro in the different cells were detected and successfully identified. Two proteins were significantly

VX-680 purchase upregulated in A549 cells (2.19- and 2.14-fold for Hsp90-beta and annexin A1, respectively) and also in H446 cells (1.72- and 1.67-fold for Hsp90-beta and annexin A1, respectively) compared with 16 HBE. The detailed information on Hsp90-beta and annexin A1 are listed in Table 2. SBE-��-CD mouse Table 2 Differential information of Hsp90-beta and annexin A1 between different cells identified by 2D-LC-MS/MS The difference between 16HBE and A549 Protein ID Description Peptide 16HBE A549 Difference medroxyprogesterone (times) MITO:558|72222 Hsp90-beta 37 0.00 1.13 2.19 MITO:650|4502101 annexin A1 62 0.00 0.60 2.14 The difference between 16HBE and H446 MITO:558|72222 Description Peptide 16HBE NCI-H446 Difference (times) Hsp90-beta 37 0.00 0.78 1.72 MITO:650|4502101 annexin A1 62 0.00 0.74 1.67 The differential proteins between different cells identified by 2D-LC-MS/MS MITO:558|72222 Description Protein mass Protein score Coverage rate Difference Hsp90-beta 83584.22 683.24 34.94% p < 0.05 MITO:650|4502101 annexin A 38918.06 564.29 50.58% Expressions of Hsp90-beta and annexin A1 in cancer

and normal tissues The protein expression levels of Hsp90-beta and annexin A1 were determined by IHC in a series of 96 specimens of lung cancer tissues and a series of 46 specimens of normal tissues. Hsp90-beta and annexin A1 were highly expressed in 57 (59.4%) and 44 (45.8%) of the 96 lung cancer tissues, respectively, whereas both were lowly expressed in three (6.5%) and seven (15.2%) of the 46 normal lung tissues. The upregulation of Hsp90-beta and annexin A1 in the lung cancer tissues and the down regulation in the normal lung tissues were observed (p < 0.0005; p = 0.001) (Table 3, Figures 1A, B, C, D, E, F, G, H, I, J, K, and L). In the statistical analysis of the 24 matched cancer and normal tissues, the expression trends of Hsp90-beta and annexin A1 were consistent in all analyzed specimens (p < 0.0005; p = 0.